2001
Light Control of Arabidopsis Development Entails Coordinated Regulation of Genome Expression and Cellular Pathways[W]
Ma L, Li J, Qu L, Hager J, Chen Z, Zhao H, Deng X. Light Control of Arabidopsis Development Entails Coordinated Regulation of Genome Expression and Cellular Pathways[W]. The Plant Cell 2001, 13: 2589-2607. PMID: 11752374, PMCID: PMC139475, DOI: 10.1105/tpc.010229.Peer-Reviewed Original ResearchMeSH KeywordsArabidopsisArabidopsis ProteinsCryptochromesDrosophila ProteinsExpressed Sequence TagsEye ProteinsFlavoproteinsGene Expression Regulation, DevelopmentalGene Expression Regulation, PlantGenome, PlantLightOligonucleotide Array Sequence AnalysisPhotoreceptor CellsPhotoreceptor Cells, InvertebratePhytochromePhytochrome APhytochrome BPlant ProteinsPlant ShootsReceptors, G-Protein-CoupledTranscription FactorsConceptsArabidopsis developmentExpression profilesGenome expressionCellular pathwaysLight-regulated genesSimilar gene expression profilesGenome expression profilesDistinct expression profilesGene expression profilesDifferent light qualitiesPhytochrome BSequence tagsCoordinated regulationPhytochrome ARegulatory pathwaysLight qualityLight conditionsDark transitionGenesPathwayLight treatmentLight controlBlue lightExpressionCryptochromes
2000
Assessing reliability of gene clusters from gene expression data
Zhang K, Zhao H. Assessing reliability of gene clusters from gene expression data. Functional & Integrative Genomics 2000, 1: 156-173. PMID: 11793234, DOI: 10.1007/s101420000019.Peer-Reviewed Original ResearchConceptsStatistical resampling methodsHierarchical clustering methodCluster identification methodNumerical algorithmGene expression dataClustering methodClustering treesResampling methodHierarchical clustering algorithmExpression dataExperiment designClustering algorithmAlgorithmChallenging problemData setsMeasured gene expression levelsEffect of variationData analysisClustersUncertaintyProblemReliability