2024
Medical image registration via neural fields
Sun S, Han K, You C, Tang H, Kong D, Naushad J, Yan X, Ma H, Khosravi P, Duncan J, Xie X. Medical image registration via neural fields. Medical Image Analysis 2024, 97: 103249. PMID: 38963972, DOI: 10.1016/j.media.2024.103249.Peer-Reviewed Original ResearchLearning-based methodsNeural fieldsNeural networkImage registrationMedical image analysis tasksMini-batch gradient descentImage analysis tasksDeep neural networksMedical image registrationDiffeomorphic image registrationImage registration frameworkOptimization-based methodDomain shiftAnalysis tasksGradient descentCompetitive performanceImage pairsRegistration taskOptimal deformationShort computation timeRegistration frameworkDesign choicesDisplacement vector fieldComputation timeModel optimization
2018
Liver Tissue Classification Using an Auto-context-based Deep Neural Network with a Multi-phase Training Framework
Zhang F, Yang J, Nezami N, Laage-gaupp F, Chapiro J, De Lin M, Duncan J. Liver Tissue Classification Using an Auto-context-based Deep Neural Network with a Multi-phase Training Framework. Lecture Notes In Computer Science 2018, 11075: 59-66. PMID: 32432233, PMCID: PMC7236808, DOI: 10.1007/978-3-030-00500-9_7.Peer-Reviewed Original ResearchNeural networkNovel deep convolutional neural networkStandard neural network approachesTraining frameworkDeep convolutional neural networkU-Net-like architectureTissue classificationConvolutional neural networkDeep neural networksNeural network approachSegmentation masksBenchmark methodsNetwork approachPatch-based strategyLearning spacesLiver tissue classificationMagnetic resonance imagesPromising resultsNetworkImagesPredictive modelClassificationFrameworkResonance imagesArchitectureBrain Biomarker Interpretation in ASD Using Deep Learning and fMRI
Li X, Dvornek NC, Zhuang J, Ventola P, Duncan JS. Brain Biomarker Interpretation in ASD Using Deep Learning and fMRI. Lecture Notes In Computer Science 2018, 11072: 206-214. PMID: 32984865, PMCID: PMC7519581, DOI: 10.1007/978-3-030-00931-1_24.Peer-Reviewed Original ResearchDeep neural networksFunctional magnetic resonance imagingBrain functional magnetic resonance imagingAutism spectrum disorderComputer visionDeep learningDNN classifierMagnetic resonance imagingCorrupt imagesNeural networkSaliency featuresClassification scenariosNeurological functionControl subjectsComplex neurodevelopmental disorderEarly diagnosisComputational decisionReliable biomarkersResonance imagingBiomarker interpretationBiomarkersDetected biomarkersNeurodevelopmental disordersBrain featuresClassifier2-Channel Convolutional 3D Deep Neural Network (2CC3D) for FMRI Analysis: ASD Classification and Feature Learning
Li X, Dvornek NC, Papademetris X, Zhuang J, Staib LH, Ventola P, Duncan JS. 2-Channel Convolutional 3D Deep Neural Network (2CC3D) for FMRI Analysis: ASD Classification and Feature Learning. 2011 IEEE International Symposium On Biomedical Imaging: From Nano To Macro 2018, 2018: 1252-1255. PMID: 32983370, PMCID: PMC7519578, DOI: 10.1109/isbi.2018.8363798.Peer-Reviewed Original ResearchConvolutional neural networkNeural networkCNN convolutional layerSpatial featuresASD classificationDeep neural networksMean F-scoreTraditional machineFeature learningConvolutional layersInput formatF-scoreClassification modelTemporal informationNetworkWindow parametersImagesClassificationConvolutionalTemporal statisticsMachineLearningFeaturesFormatScheme