2023
The Sordariomycetes: an expanding resource with Big Data for mining in evolutionary genomics and transcriptomics
Wang Z, Kim W, Wang Y, Yakubovich E, Dong C, Trail F, Townsend J, Yarden O. The Sordariomycetes: an expanding resource with Big Data for mining in evolutionary genomics and transcriptomics. Frontiers In Fungal Biology 2023, 4: 1214537. PMID: 37746130, PMCID: PMC10512317, DOI: 10.3389/ffunb.2023.1214537.Peer-Reviewed Reviews, Practice Guidelines, Standards, and Consensus StatementsEvolutionary genomicsOmics dataFungal sexual developmentAncestral state analysisRichness of speciesDifferent taxonomic levelsAspects of biologySpecies/generaSystems biological analysisRegulatory network modelKnowledge of evolutionAscomycete genomesSordariomycetes classFungal evolutionTrait diversityDivergent lineagesFungal kingdomFungal biologyGenomic scaleSecondary metabolismModel genomesModel fungusModel speciesEcological diversityKey genetic elements
2016
Future Perspectives and Challenges of Fungal Systematics in the Age of Big Data
Wang Z, Nilsson R, James T, Dai Y, Townsend J. Future Perspectives and Challenges of Fungal Systematics in the Age of Big Data. Fungal Biology 2016, 25-46. DOI: 10.1007/978-3-319-29137-6_3.ChaptersFungal systematicsMolecular phylogenyEnvironmental DNA surveysHigh-throughput sequencingSequence-based classificationFungal treeFungal evolutionPhylogenetic informativenessFungal genomesIntegrative taxonomyDNA surveysFungal researchEvolutionary biologyPhylogenetic inferenceComparative biologyTaxonomic ranksEcological charactersFungal classificationInformative experimental designGenetic markersMycological researchPhylogenySanger sequencingSystematicsBiology