2012
A semantic web framework to integrate cancer omics data with biological knowledge
Holford ME, McCusker JP, Cheung KH, Krauthammer M. A semantic web framework to integrate cancer omics data with biological knowledge. BMC Bioinformatics 2012, 13: s10. PMID: 22373303, PMCID: PMC3471346, DOI: 10.1186/1471-2105-13-s1-s10.Peer-Reviewed Original ResearchConceptsBiological knowledgeOmics dataSemantic modelFundamental biological knowledgeGene ontology dataCancer omics dataEpigenomic dataRegulatory networksSemantic Web technologiesTranscription factorsSemantic Web frameworkUnified data sourceGene promoterDemethylating agentApoptosis pathwayAnti-cancer therapySemantic WebSPARQL endpointsWeb technologiesRDF triplesWeb frameworkOntology dataData warehouseUniform interfaceReasoning tools
2008
Yale Image Finder (YIF): a new search engine for retrieving biomedical images
Xu S, McCusker J, Krauthammer M. Yale Image Finder (YIF): a new search engine for retrieving biomedical images. Bioinformatics 2008, 24: 1968-1970. PMID: 18614584, PMCID: PMC2732221, DOI: 10.1093/bioinformatics/btn340.Peer-Reviewed Original ResearchMeSH KeywordsAlgorithmsDatabase Management SystemsDocumentationInformation Storage and RetrievalInternetNatural Language ProcessingRadiology Information SystemsSoftwareUser-Computer InterfaceConceptsImage of interestSearch enginesBiomedical imagesNew search engineSimilar image contentsAccessible search enginesImage querySearch scenariosImage captionsRelevant imagesImage contentRelated imagesHigh-resolution imagesSearch keywordsPaper abstractsUsersResolution imagesImagesEngineFinderSource papersRelated papersQueriesJournal papersThumbnails