2021
LinkedImm: a linked data graph database for integrating immunological data
Bukhari SAC, Pawar S, Mandell J, Kleinstein SH, Cheung KH. LinkedImm: a linked data graph database for integrating immunological data. BMC Bioinformatics 2021, 22: 105. PMID: 34433410, PMCID: PMC8385794, DOI: 10.1186/s12859-021-04031-9.Peer-Reviewed Original ResearchConceptsGraph databaseGraph-based query languageVisual graph query interfacesNoSQL database technologyHeterogeneous biological dataWeb-based dashboardQuery interfaceQuery languageDatabase technologyGraph dataSQL databaseData retrievalData integrationMultiple data typesBiomedical domainNatural languageData typesUsersBiological dataMultiple sourcesScalable methodDatabaseLanguageMetadataSystems biology studies
2020
A structured model for immune exposures
Vita R, Overton JA, Dunn P, Cheung KH, Kleinstein SH, Sette A, Peters B. A structured model for immune exposures. Database 2020, 2020: baaa016. PMID: 32283555, PMCID: PMC7153954, DOI: 10.1093/database/baaa016.Peer-Reviewed Original ResearchMeSH KeywordsAntibodiesAntigensBiological OntologiesComputational BiologyData CurationDatabases, FactualEpitopesHumansImmune SystemImmune System DiseasesConceptsImmune exposure
2019
Reporting and connecting cell type names and gating definitions through ontologies
Overton JA, Vita R, Dunn P, Burel JG, Bukhari SAC, Cheung KH, Kleinstein SH, Diehl AD, Peters B. Reporting and connecting cell type names and gating definitions through ontologies. BMC Bioinformatics 2019, 20: 182. PMID: 31272390, PMCID: PMC6509839, DOI: 10.1186/s12859-019-2725-5.Peer-Reviewed Original Research