2021
LinkedImm: a linked data graph database for integrating immunological data
Bukhari SAC, Pawar S, Mandell J, Kleinstein SH, Cheung KH. LinkedImm: a linked data graph database for integrating immunological data. BMC Bioinformatics 2021, 22: 105. PMID: 34433410, PMCID: PMC8385794, DOI: 10.1186/s12859-021-04031-9.Peer-Reviewed Original ResearchConceptsGraph databaseGraph-based query languageVisual graph query interfacesNoSQL database technologyHeterogeneous biological dataWeb-based dashboardQuery interfaceQuery languageDatabase technologyGraph dataSQL databaseData retrievalData integrationMultiple data typesBiomedical domainNatural languageData typesUsersBiological dataMultiple sourcesScalable methodDatabaseLanguageMetadataSystems biology studies
2015
The center for expanded data annotation and retrieval
Musen MA, Bean CA, Cheung KH, Dumontier M, Durante KA, Gevaert O, Gonzalez-Beltran A, Khatri P, Kleinstein SH, O’Connor M, Pouliot Y, Rocca-Serra P, Sansone SA, Wiser JA, team A. The center for expanded data annotation and retrieval. Journal Of The American Medical Informatics Association 2015, 22: 1148-1152. PMID: 26112029, PMCID: PMC5009916, DOI: 10.1093/jamia/ocv048.Peer-Reviewed Original ResearchMeSH KeywordsBiological OntologiesBiomedical ResearchData MiningDatasets as TopicHumansInformation Storage and RetrievalUnited StatesConceptsData annotationBiomedical datasetsData management environmentData discoveryMetadata repositoryMetadata authoringData reuseEnd solutionMetadata templateData repositoryData entryRepositoryMetadataAnnotationDatasetComputational techniquesRetrievalExperimental datasetsProject consortiumStandard templateHuman Immunology Project ConsortiumAuthoringDifferent kindsDevelopersPossible refinements