2024
IL-10 constrains sphingolipid metabolism to limit inflammation
York A, Skadow M, Oh J, Qu R, Zhou Q, Hsieh W, Mowel W, Brewer J, Kaffe E, Williams K, Kluger Y, Smale S, Crawford J, Bensinger S, Flavell R. IL-10 constrains sphingolipid metabolism to limit inflammation. Nature 2024, 627: 628-635. PMID: 38383790, PMCID: PMC10954550, DOI: 10.1038/s41586-024-07098-5.Peer-Reviewed Original ResearchActivity of RelCeramide productionVery long chainFatty acid synthesis pathwayCeramide synthase 2Fatty acid homeostasisMetabolic fluxAvailable to cellsRegulatory nodesTranscription factorsCeramide accumulationSynthesis pathwayVLC ceramidesIL-10 deficiencyGene expressionSphingolipid metabolismAcid homeostasisAberrant activationIL-10Cell types1Innate immune cellsInflammatory gene expressionCeramideSignaling resultsGenetic deletion
2006
Characterizing disease states from topological properties of transcriptional regulatory networks
Tuck DP, Kluger HM, Kluger Y. Characterizing disease states from topological properties of transcriptional regulatory networks. BMC Bioinformatics 2006, 7: 236. PMID: 16670008, PMCID: PMC1482723, DOI: 10.1186/1471-2105-7-236.Peer-Reviewed Original ResearchConceptsTranscriptional regulatory networksRegulatory networksTranscription factorsTranscriptional networksRegulated genesGene deregulationExpression profilesDiseased statesGene regulatory networksCentrality of genesGene expression experimentsGene expression profilesGene expression studiesGene centralityRegulatory linkExpression experimentsExpression studiesGene linksGenesCell typesExpression datasetsGene subsetsDifferential activityNormal cellsRemarkable degree
2001
Genomic and proteomic analysis of the myeloid differentiation program
Lian Z, Wang L, Yamaga S, Bonds W, Beazer-Barclay Y, Kluger Y, Gerstein M, Newburger P, Berliner N, Weissman S. Genomic and proteomic analysis of the myeloid differentiation program. Blood 2001, 98: 513-524. PMID: 11468144, DOI: 10.1182/blood.v98.3.513.Peer-Reviewed Original ResearchConceptsNew transcription factorMammalian cell typesMurine bone marrow cellsGene expression patternsDominant-negative retinoic acid receptorGene expression changesTranscription regulatory factorsMyeloid differentiation programRetinoic acid receptorsTranscription factorsProteomic analysisDifferentiation programArray hybridizationDifferential displayExpression patternsExpression changesPromyelocytic cell lineRegulatory factorsMyeloid differentiationLevels of mRNACell typesMolecular levelExtensive catalogueMicroM retinoic acidBone marrow cells