2024
Fragmentstein—facilitating data reuse for cell-free DNA fragment analysis
Balázs Z, Gitchev T, Ivanković I, Krauthammer M. Fragmentstein—facilitating data reuse for cell-free DNA fragment analysis. Bioinformatics 2024, 40: btae017. PMID: 38224549, PMCID: PMC10805340, DOI: 10.1093/bioinformatics/btae017.Peer-Reviewed Original ResearchConceptsCopy number variantsNucleotide-level informationCell-free DNA sequencing dataDNA fragmentation analysisCell-free DNASensitive genomic dataFragment length analysisNucleosome occupancyBAM filesCommand-line toolSequence dataGenomic dataAnalysis of cell-free DNASequence informationGNU GPLv3Bioinformatics softwareFragment analysisFunctional analysisAlignment mapData sharingLength analysisFragmentsSimplified formatLimited data sharingGenome
2008
Yale Image Finder (YIF): a new search engine for retrieving biomedical images
Xu S, McCusker J, Krauthammer M. Yale Image Finder (YIF): a new search engine for retrieving biomedical images. Bioinformatics 2008, 24: 1968-1970. PMID: 18614584, PMCID: PMC2732221, DOI: 10.1093/bioinformatics/btn340.Peer-Reviewed Original ResearchConceptsImage of interestSearch enginesBiomedical imagesNew search engineSimilar image contentsAccessible search enginesImage querySearch scenariosImage captionsRelevant imagesImage contentRelated imagesHigh-resolution imagesSearch keywordsPaper abstractsUsersResolution imagesImagesEngineFinderSource papersRelated papersQueriesJournal papersThumbnails